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Savannas are water‐limited ecosystems characterized by two dominant plant types: trees and an understory primarily made up grass. Different phenology and root structures of these plant types complicate how savanna primary productivity responds to changes in water availability. We tested the hypothesis that productivity in savannas is controlled by the temporal and vertical distribution of soil water content (SWC) and differences in growing season length of understory and tree plant functional types. To quantify the relationship between tree, understory, and savanna‐wide phenology and productivity, we used PhenoCam and satellite observations surrounding an eddy covariance tower at a semiarid savanna site in Arizona, USA. We distinguished between SWC across two different depth intervals (shallow, <0–30 cm and deep, >30–100 cm). We found that tree greenness increased with SWC at both depths, while understory greenness was only sensitive to the shallower SWC measurements. Onset of ecosystem dormancy, estimated from satellite observations close to the eddy covariance tower, explained more variability in annual gross primary productivity (GPP) than in other phenometrics. Higher SWC led to an extended growing season, caused by delayed dormancy in trees, but the understory showed no evidence of delayed dormancy in wetter periods. We infer that the timing of ecosystem scale dormancy, driven by trees, is important in understanding changes in a savanna's GPP. These findings highlight the important effects of rainfall during the winter. These findings suggest that savanna GPP is conditional on different responses to moisture availability in each of the dominant vegetation components.

Carbon, water and energy exchange between the land and atmosphere controls how ecosystems either accelerate or ameliorate the effect of climate change. However, evaluating improvements to processes controlling carbon cycling, water use and energy exchange in global land surface models (LSMs) remains challenging in part because of persistent model errors in estimating leaf area. Here we evaluate the changes in global carbon, water and energy exchange brought about when a LSM prognostic estimates of leaf area are made consistent with estimates from satellites. This approach achieves two aims; first to quantify the effect of ignoring errors in leaf area index (LAI) on land‐atmosphere fluxes and second, to evaluate how closely this LSM replicates fluxes with and without an LAI constraint. We implemented an ensemble Kalman filter with spatiotemporal adaptive inflation to more closely match community land model (CLM5.0) estimates of leaf area to those from the Global Inventory Modeling and Mapping Studies leaf area index (LAI3g) product. We then evaluate the model's estimates of gross primary productivity (GPP) and latent heat flux (LE) against well established global estimates of these fluxes. We find that the model is biased high by 27% relative to the LAI3g product. Moreover, the effect of bias in LAI is substantial for GPP (18%) and LE (6%) and likely to confound efforts to refine processes controlling these fluxes. This data assimilation approach serves as a method to evaluate the efficacy of refinements to flux processes until the processes controlling the dynamics of LAI are better resolved in LSMs.

Hybrid-poplar tree plantations provide a source for biofuel and biomass, but they also increase forest isoprene emissions. The consequences of increased isoprene emissions include higher rates of tropospheric ozone production, increases in the lifetime of methane, and increases in atmospheric aerosol production, all of which affect the global energy budget and/or lead to the degradation of air quality. Using RNA interference (RNAi) to suppress isoprene emission, we show that this trait, which is thought to be required for the tolerance of abiotic stress, is not required for high rates of photosynthesis and woody biomass production in the agroforest plantation environment, even in areas with high levels of climatic stress. Biomass production over 4 y in plantations in Arizona and Oregon was similar among genetic lines that emitted or did not emit significant amounts of isoprene. Lines that had substantially reduced isoprene emission rates also showed decreases in flavonol pigments, which reduce oxidative damage during extremes of abiotic stress, a pattern that would be expected to amplify metabolic dysfunction in the absence of isoprene production in stress-prone climate regimes. However, compensatory increases in the expression of other proteomic components, especially those associated with the production of protective compounds, such as carotenoids and terpenoids, and the fact that most biomass is produced prior to the hottest and driest part of the growing season explain the observed pattern of high biomass production with low isoprene emission. Our results show that it is possible to reduce the deleterious influences of isoprene on the atmosphere, while sustaining woody biomass production in temperate agroforest plantations.

Macrosystem‐scale research is supported by many ecological networks of people, infrastructure, and data. However, no network is sufficient to address all macrosystems ecology research questions, and there is much to be gained by conducting research and sharing resources across multiple networks. Unfortunately, conducting macrosystem research across networks is challenging due to the diversity of expertise and skills required, as well as issues related to data discoverability, veracity, and interoperability. The ecological and environmental science community could substantially benefit from networking existing networks to leverage past research investments and spur new collaborations. Here, we describe the need for a “network of networks” (NoN) approach to macrosystems ecological research and articulate both the challenges and potential benefits associated with such an effort. We describe the challenges brought by rapid increases in the volume, velocity, and variety of “big data” ecology and highlight how a NoN could build on the successes and creativity within component networks, while also recognizing and improving upon past failures. We argue that a NoN approach requires careful planning to ensure that it is accessible and inclusive, incorporates multimodal communications and ways to interact, supports the creation, testing, and promulgation of community standards, and ensures individuals and groups receive appropriate credit for their contributions. Additionally, a NoN must recognize important trade‐offs in network architecture, including how the degree of centralization of people, infrastructure, and data influence network scalability and creativity. If implemented carefully and thoughtfully, a NoN has the potential to substantially advance our understanding of ecological processes, characteristics, and trajectories across broad spatial and temporal scales in an efficient, inclusive, and equitable manner.

Increasing water‐use efficiency (WUE), the ratio of carbon gain to water loss, is a key mechanism that enhances carbon uptake by terrestrial vegetation under rising atmospheric CO₂(c_a). Existing theory and empirical evidence suggest a proportional WUE increase in response to risingc_aas plants maintain a relatively constant ratio between the leaf intercellular (c_i) and ambient (c_a) partial CO₂pressure (c_i/c_a). This has been hypothesized as the main driver of the strengthening of the terrestrial carbon sink over the recent decades. However, proportionality may not characterize CO₂effects on WUE on longer time‐scales and the role of climate in modulating these effects is uncertain. Here, we evaluate long‐term WUE responses toc_aand climate from 1901 to 2012 CE by reconstructing intrinsic WUE (iWUE, the ratio of photosynthesis to stomatal conductance) using carbon isotopes in tree rings across temperate forests in the northeastern USA. We show that iWUE increased steadily from 1901 to 1975 CE but remained constant thereafter despite continuously risingc_a. This finding is consistent with a passive physiological response toc_aand coincides with a shift to significantly wetter conditions across the region. Tree physiology was driven by summer moisture at multi‐decadal time‐scales and did not maintain a constantc_i/c_ain response to risingc_aindicating that a point was reached where rising CO₂had a diminishing effect on tree iWUE. Our results challenge the mechanism, magnitude, and persistence of CO₂'s effect on iWUE with significant implications for projections of terrestrial productivity under a changing climate.

Severe drought can cause lagged effects on tree physiology that negatively impact forest functioning for years. These “drought legacy effects” have been widely documented in tree‐ring records and could have important implications for our understanding of broader scale forest carbon cycling. However, legacy effects in tree‐ring increments may be decoupled from ecosystem fluxes due to (a) postdrought alterations in carbon allocation patterns; (b) temporal asynchrony between radial growth and carbon uptake; and (c) dendrochronological sampling biases. In order to link legacy effects from tree rings to whole forests, we leveraged a rich dataset from a Midwestern US forest that was severely impacted by a drought in 2012. At this site, we compiled tree‐ring records, leaf‐level gas exchange, eddy flux measurements, dendrometer band data, and satellite remote sensing estimates of greenness and leaf area before, during, and after the 2012 drought. After accounting for the relative abundance of tree species in the stand, we estimate that legacy effects led to ~10% reductions in tree‐ring width increments in the year following the severe drought. Despite this stand‐scale reduction in radial growth, we found that leaf‐level photosynthesis, gross primary productivity (GPP), and vegetation greenness were not suppressed in the year following the 2012 drought. Neither temporal asynchrony between radial growth and carbon uptake nor sampling biases could explain our observations of legacy effects in tree rings but not in GPP. Instead, elevated leaf‐level photosynthesis co‐occurred with reduced leaf area in early 2013, indicating that resources may have been allocated away from radial growth in conjunction with postdrought upregulation of photosynthesis and repair of canopy damage. Collectively, our results indicate that tree‐ring legacy effects were not observed in other canopy processes, and that postdrought canopy allocation could be an important mechanism that decouples tree‐ring signals from GPP.

Linking biometric measurements of stand‐level biomass growth to tower‐based measurements of carbon uptake—gross primary productivity and net ecosystem productivity—has been the focus of numerous ecosystem‐level studies aimed to better understand the factors regulating carbon allocation to slow‐turnover wood biomass pools. However, few of these studies have investigated the importance of previous year uptake to growth. We tested the relationship between wood biomass increment (WBI) and different temporal periods of carbon uptake from the current and previous years to investigate the potential lagged allocation of fixed carbon to growth among six mature, temperate forests. We found WBI was strongly correlated to carbon uptake across space (i.e., long‐term averages at the different sites) but on annual timescales, WBI was much less related to carbon uptake, suggesting a temporal mismatch between C fixation and allocation to biomass. We detected lags in allocation of the previous year's carbon uptake to WBI at three of the six sites. Sites with higher annual WBI had overall stronger correlations to carbon uptake, with the strongest correlations to carbon uptake from the previous year. Only one site had WBI with strong positive relationships to current year uptake and not the previous year. Forests with low rates of WBI demonstrated weak correlations to carbon uptake from the previous year and stronger relationships to current year climate conditions. Our work shows an important, but not universal, role of lagged allocation of the previous year's carbon uptake to growth in temperate forests.